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accession-icon SRP000931
Melanoma Cell Transcriptome
  • organism-icon Homo sapiens
  • sample-icon 14 Downloadable Samples
  • Technology Badge IconIlluminaGenomeAnalyzerII

Description

Paired end sequencing of cDNA isolated from individual melanoma samples via the Illumina sequencing platform to identify genetic aberrations that may play a role in melanoma genesis.

Publication Title

Integrative analysis of the melanoma transcriptome.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon SRP011371
Escherichia coli str. K-12 substr. MG1655 Transcriptome or Gene expression
  • organism-icon Escherichia coli
  • sample-icon 9 Downloadable Samples
  • Technology Badge IconIllumina Genome Analyzer II

Description

The goal was to establish a robust and scalable RNA-seq process applicable to cultured bacteria as well as to complex community transcriptomes. To this end, we evaluated rRNA depletion methods and chose a protocol that eliminates rRNA reads efficiently and robustly, and largely irrespective of the quality of the RNA input sample.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Cell line

View Samples
accession-icon SRP052182
Arthropod Cell Line RNA Seq
  • organism-icon Anopheles gambiae
  • sample-icon 7 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

Transcriptome sequencing of arthropod cell lines

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Disease, Cell line

View Samples
accession-icon SRP052081
Arthropod Cell Line RNA Seq
  • organism-icon Anopheles gambiae
  • sample-icon 7 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

Transcriptome sequencing of arthropod cell lines

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Disease, Cell line

View Samples
accession-icon SRP052130
Arthropod Cell Line RNA Seq
  • organism-icon Anopheles gambiae
  • sample-icon 7 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

Transcriptome sequencing of arthropod cell lines

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Disease, Cell line

View Samples
accession-icon SRP052102
Arthropod Cell Line RNA Seq
  • organism-icon Anopheles gambiae
  • sample-icon 7 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

Transcriptome sequencing of arthropod cell lines

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Disease, Cell line

View Samples
accession-icon SRP052092
Arthropod Cell Line RNA Seq
  • organism-icon Anopheles gambiae
  • sample-icon 7 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

Transcriptome sequencing of arthropod cell lines

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Disease, Cell line

View Samples
accession-icon SRP052175
Arthropod Cell Line RNA Seq
  • organism-icon Anopheles gambiae
  • sample-icon 7 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

Transcriptome sequencing of arthropod cell lines

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Disease, Cell line

View Samples
accession-icon SRP052190
Arthropod Cell Line RNA Seq
  • organism-icon Anopheles gambiae
  • sample-icon 7 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

Transcriptome sequencing of arthropod cell lines

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Disease, Cell line

View Samples
accession-icon SRP052157
Arthropod Cell Line RNA Seq
  • organism-icon Anopheles gambiae
  • sample-icon 7 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

Transcriptome sequencing of arthropod cell lines

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Disease, Cell line

View Samples
...

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

Powered by Alex's Lemonade Stand Foundation

Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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