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accession-icon GSE85240
Gene expression changes in stimulated and unstimulated Foxp1-deficient B cells.
  • organism-icon Mus musculus
  • sample-icon 10 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Foxp1 is expressed throughout B cell development, but the physiological functions in mature B lymphocytes are unknown. We therefore evaluated differential gene expression in Foxp1-deficient B cells, with or

Publication Title

Foxp1 controls mature B cell survival and the development of follicular and B-1 B cells.

Sample Metadata Fields

Specimen part

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accession-icon SRP097584
Mus musculus Raw sequence reads
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

T cell lymphoma

Publication Title

PD-1 is a haploinsufficient suppressor of T cell lymphomagenesis.

Sample Metadata Fields

Sex, Specimen part, Cell line

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accession-icon E-TABM-63
Transcription profiling by array of Arabidopsis overexpressing artifical microRNAs
  • organism-icon Arabidopsis thaliana
  • sample-icon 20 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

Tissues of Arabidopsis plants overexpressing artificial microRNAs were compared to wild_type and respective target gene mutants (duplicate arrays)

Publication Title

Highly specific gene silencing by artificial microRNAs in Arabidopsis.

Sample Metadata Fields

Specimen part

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accession-icon E-ATMX-24
Transcription profiling of Arabidopsis Umkirch-1/Umkirch-3 hybrid plants grown at 23C and 16C in short day conditions
  • organism-icon Arabidopsis thaliana
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

Umkirch-1/Umkirch-3 hybrid plants and their parents were grown at 23SD and then shifted to 16SD for five days. 10 plants were pooled in each of three sample replicates.

Publication Title

Autoimmune response as a mechanism for a Dobzhansky-Muller-type incompatibility syndrome in plants.

Sample Metadata Fields

Specimen part

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accession-icon GSE60888
Gene expression profile of cell lines 2106T, H1975 and MeWo after knockdown of PAEP.
  • organism-icon Homo sapiens
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

Gene expression profile was analyzed after knockdown of PAEP in lung cancer cell lines 2106T and H1975 as well as in skin cancer cell line MeWo.

Publication Title

Glycodelin: A New Biomarker with Immunomodulatory Functions in Non-Small Cell Lung Cancer.

Sample Metadata Fields

Specimen part, Cell line, Treatment

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accession-icon GSE115458
Role of PAEP/glycodelin in NSCLC
  • organism-icon Homo sapiens
  • sample-icon 95 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Pathways regulating the expression of the immunomodulatory protein glycodelin in non‑small cell lung cancer.

Sample Metadata Fields

Sex, Age, Specimen part, Cell line, Treatment

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accession-icon GSE115457
Gene expression profiling of NSCLC tumors with high and low PAEP expression
  • organism-icon Homo sapiens
  • sample-icon 67 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

Gene expression profiling of NSCLC tumors with distinct PAEP expression suggested several pathways, which might be involved in the regulation of PAEP/glycodelin expression.

Publication Title

Pathways regulating the expression of the immunomodulatory protein glycodelin in non‑small cell lung cancer.

Sample Metadata Fields

Sex, Age, Specimen part

View Samples
accession-icon GSE10245
Gene expression differences between adenocarcinoma and squamous cell carcinoma in human NSCLC
  • organism-icon Homo sapiens
  • sample-icon 55 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

Non-small cell lung cancer (NSCLC) can be classified into the major subtypes adenocarcinoma (AC) and squamous cell carcinoma (SCC) subtypes. Although explicit molecular, histological and clinical characteristics have been reported for both subtypes, no specific therapy exists so far. However, the characterization of suitable molecular targets holds great promises to develop novel therapies in NSCLC. In the present study, global gene expression profiling of 58 human high grade NSCLC specimens revealed large transcriptomic differences between AC and SCC subtypes: More than 1.700 genes were found to be differentially expressed.

Publication Title

Global gene expression analysis reveals specific patterns of cell junctions in non-small cell lung cancer subtypes.

Sample Metadata Fields

Disease, Disease stage

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accession-icon GSE11764
Expression data from postnatal day (P) 14, 28, 60 mouse visual cortex (V1)
  • organism-icon Mus musculus
  • sample-icon 30 Downloadable Samples
  • Technology Badge Icon Affymetrix Murine Genome U74A Version 2 Array (mgu74av2)

Description

Analysis of gene expression before (P14), during (P28), and after (P60) the critical period for ocular dominance plasticity.

Publication Title

Gene expression patterns in visual cortex during the critical period: synaptic stabilization and reversal by visual deprivation.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE115456
Gene expression profiling of two NSCLC cell lines treated with PAEP/glycodelin expression stimulating substances
  • organism-icon Homo sapiens
  • sample-icon 28 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

We compared H1975 and 2106T cells treated with PAEP/glycodelin expression inducing substances and the corresponding contol treated cells.

Publication Title

Pathways regulating the expression of the immunomodulatory protein glycodelin in non‑small cell lung cancer.

Sample Metadata Fields

Specimen part, Cell line, Treatment

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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